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      <copyright>Copyright 2008</copyright>
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            <item>
         <title>OA and licensing: why not Public Domain?</title>
         <description><![CDATA[<p>This is an unpublished post that's so old (Aug '07) that I don't know why I didn't just post the damn thing;  I've forgotten what I was intending to do with it.  I'm posting it now because it contains pointers to useful thinking by David Wiley and others that is germane to the ongoing discussion of data licensing (see post below).  I was reminded of this old draft of mine by <a href="http://mndoci.com/blog/2008/05/11/the-open-data-licensing-issue/">Deepak's comment</a> that copyleft may be harmful in the case of scientific data, a point David also makes in respect of his particular Open area, education.  Much of what David says maps readily from his field to research, so without further ado:</p>

<p>David Wiley of <a href="http://opencontent.org/blog/">Iterating Toward Openness</a> has been blogging up a storm about open content licensing:</p>

<ul><li><a href="http://opencontent.org/blog/archives/347">Noncommercial Isn't
    the Problem, ShareAlike Is</a></li>
  <li><a href="http://opencontent.org/blog/archives/348">ShareAlike, the
    Public Domain, and Privileging</a></li>
  <li><a href="http://opencontent.org/blog/archives/349">Copyleft and Fish
    in Water</a></li>
  <li><a href="http://opencontent.org/blog/archives/355">Open Education
    License Draft</a></li>
  <li><a href="http://opencontent.org/blog/archives/364">Assymetry,
    Hypocrisy, and Public Domain</a></li>
  <li><a href="http://opencontent.org/blog/archives/366">Why Not CC
    By?</a></li></ul>

<p>That's a lot to read, but it's all good stuff.  David makes one very strong argument that I want to emphasize here, because it points up the difficult distinction between <em>data</em> and <em>(creative) work</em>.  </p>

<p>In <a href="http://opencontent.org/blog/archives/355">the post introducing his draft Open Education Licence</a>, he provides a very useful outline of the aims of open content: </p>

<ul><li>Reuse - Use the work verbatim, just exactly as you found it</li>
  <li>Rework - Alter or transform the work so that it better meets your needs</li>
  <li>Remix - Combine the (verbatim or altered) work with other works to better meet your needs</li>
  <li>Redistribute - Share the verbatim work, the reworked work, or the remixed work with others </li></ul>

<p>I really, really like that.  David's "four R's" resemble the four fundamental freedoms of the <a href="http://www.fsf.org/licensing/essays/free-sw.html">Free Software Foundation</a> but do a better job of discriminating between Rework and Remix.  The Four R's make immediate sense to me and I will certainly be Reusing and Redistributing that idea.  </p>

<p>David goes on to quote some believable numbers and points out that: <blockquote>Since half of all CC licensed materials are licensed using a copyleft clause and all GFDL licensed materials are licensed using a copyleft clause, this means that over half of the world's open content is copylefted. And while the CC and GFDL copyleft clauses guarantee that all derivative works will be "open," they also guarantee that they can never be used in remixes with the majority of other copylefted works. You can't remix a GFDL work with a By-NC-SA work when the licenses require that the child be licensed exactly as the parent. Each parent had one and only one license - which license would the derivative use? It's just not possible to legally remix these materials; copyleft prevents this remixing. [see David's <a href="http://opencontent.org/blog/archives/347">earlier explanation</a> for details of the incompatibilities among various copyleft licenses]</p>

<p>While promoting rework at the expense of remix - in other words, taking the copyleft approach - is fine for software, it is problematic for content and extremely problematic for education. As educators, we are always remixing materials for use in our classrooms both in the "real" world and online. Your mileage may vary, but over my last 15 years of teaching I would estimate that my remixing activities outnumber my reworking activities 10:1 or more. If other teachers are like me in this regard, then, copyleft is a huge problem for open education.</blockquote>  It's potentially a huge problem for scientists, too, because much of the potential of Open Science and Open Data (see <a href="http://3quarksdaily.blogs.com/3quarksdaily/2006/11/the_future_of_s.html">here</a> for an attempt at defining those terms) is in Remix.  There are answers in existing datasets to questions their creators never thought to ask; as <a href="http://optimalscholarship.blogspot.com/">Alma Swan</a> <a href="http://eprints.ecs.soton.ac.uk/13028/01/AS-OA-final.pdf">put it</a>, <br />
<blockquote>...exciting new developments in text-mining and data-mining are beginning to show what can be done to create new, meaningful scientific information from existing, dispersed information using computer technologies. Research articles and accompanying data files can be searched, indexed and mined using semantic technologies to put together pieces of hitherto unrelated information that will further science and scholarship in ways that we have yet to begin imagining.</blockquote> This is why I join <a href="http://wwmm.ch.cam.ac.uk/blogs/murrayrust/?p=485">Peter Murray-Rust</a> in being against copyleft for data: <blockquote>I am not in favour of copyleft for data. I have no fundamental objection to creating a copyrighted work from data as long as there is significant added value. And copyleft is viral - deliberately. If any item in a system/collection/program etc. is copyleft, then the whole is (at least by the algorithm).  [...]<br />
I would argue that if I get factual information from WP [wikipedia] then it cannot carry a copyleft. I need the fundamental physical constants and get them from WP. I don't think that my data and programs are thereby copyleft. All algorithms are now slightly fuzzy.</blockquote> So what do we mean by "data"?  What I mean is "facts about the world of sense-perception", as distinct from the presentation and interpretation of those facts.  So I might not be free to reproduce, say, a scan of a Western blot from a published paper -- but having looked at that image, I had better be completely free to do whatever I like with the information it gives me about the way the world works, or else science will grind to a halt.  Similarly, if a review article (which contains no new facts, and is all reuse and remix) brings together the results of a number of studies to create new information, or a new hypothesis, about the way the world works, I am not free to copy the wording but I must be free to go into my lab and test the hypothesis.</p>

<p><br />
See also (this was a note to myself in the draft, so caveat lector!): </p>

<p><a href="http://www.kuro5hin.org/story/2005/9/11/16331/0655">CC-NC considered harmful (Kuroshin)</a><br />
<a href="http://biology.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pbio.0050285">When is OA not OA? (Catriona MacCallum in PLoS Biology)</a><br />
<a href="http://sciencecommons.org/weblog/archives/2007/11/07/cc-oa-moral-rights/">CC, OA and moral rights (Thinh Nguyen, Science Commons blog)</a><br />
<a href="http://wwmm.ch.cam.ac.uk/blogs/murrayrust/?p=802">Open Data and Moral Rights (Peter Murray-Rust)</a></p>

<p><br />
-----<br />
In the interests of full disclosure, I have a <a href="http://www.sennoma.net/main/archives/2004/01/copyright_copyleft_copy_whatev.php">personal statement</a> for this blog which I hope places the content squarely in the public domain, and for my columns on 3QuarksDaily I use <a href="http://creativecommons.org/licenses/by/3.0/">CC-BY</a> so that, if those pieces generate any interest, 3QD might at least get some traffic out of having generously offered me a spot on their roster.<br />
<br /></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/05/oa_and_licensing_new_kid_on_th.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/05/oa_and_licensing_new_kid_on_th.php</guid>
         <category>open access/open science</category>
         <pubDate>Sun, 11 May 2008 20:51:41 -0800</pubDate>
      </item>
            <item>
         <title>Data are difficult.</title>
         <description><![CDATA[<p>Scientific data are not only hard to come by, they're almost as hard to share, mainly because the scientific infrastructure is armpit-deep and sinking fast in the quicksand of patents, copyrights and ever-multiplying licenses.  See <a href="http://wwmm.ch.cam.ac.uk/blogs/murrayrust/?p=1090">Peter Murray-Rust</a>, <a href="http://www.chemspider.com/blog/it-appears-chemspider-does-bad-by-using-creative-commons-licenses.html">Antony Williams</a> and <a href="http://chem-bla-ics.blogspot.com/2008/05/does-chemspider-really-violate-open.html">Egon Willighagen</a> for the latest dust-up over data licensing; I just want to point out <a href="http://network.nature.com/blogs/user/wilbanks/2008/05/10/on-the-erosion-of-the-public-domain">this clear-eyed commentary by John Wilbanks</a>: <blockquote>The public domain is not an "unlicensed commons". The public domain does not equal the BSD. It is not a licensing option.</p>

<p>It is the natural legal state of data.</p>

<p>It is a damn shame that we no longer think of the public domain as an option that is attractive. It's a sign of the victory of the content holders that the free licensing movements work against that something without a license -- something that is truly free, not just just free "as in" -- is somehow thought to be worse. We've bought into their games if we allow the public domain to be defined as the BSD. The idea of the public domain has been subjected to continuous erosion thanks to both the big content companies and our own movements, to the point where we think freedom only comes in a contract.</p>

<p>The public domain is not contractually constructed. It just <strong>is</strong>. It cannot be made more free, only less free. And if we start a culture of licensing and enclosing the public domain (stuff that is actually already free, like the human genome) in the name of "freedom" we're playing a dangerous game.</p>

<p>There's a lot more to get at here.</blockquote>Yes, there is, and you should read the rest of that entry (and keep up with John's blog) if you're at all interested.  I'll add just one brief comment: back when John's <a href="http://sciencecommons.org/about/whoweare/wilbanks/">current job</a> was first advertised, I considered applying for it -- not that I thought I was qualified, but perhaps the SC would want to hire the new director an offsider of some sort.  Having had a couple of years to start learning a bit about Open Access and Open Science, I would venture to say that we are all better off with me in the cheerleading section instead of on the field.</p>

<p><br /></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/05/data_are_difficult.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/05/data_are_difficult.php</guid>
         <category>open access/open science</category>
         <pubDate>Sat, 10 May 2008 13:35:06 -0800</pubDate>
      </item>
            <item>
         <title>Everyone needs a hobby.</title>
         <description><![CDATA[<p>Mine, when I have time for it, is photography.  I'll still post some photos, like the mouse below, to this blog; but now I have a separate blog for those images I would (if I weren't worried about sounding like a complete wanker) call "my art".  The link is at the top of the new column at left, where I'll manually add thumbnails from that blog.  It's at <a href="http://www.my-expressions.com/">Expressions.com</a>, because I haven't the time to make <i>exactly</i> what I want and of all the photoblogging services I tried, only Expressions gave me enough control over the format to make it (nearly) as simple as I wanted.</p>

<p>So.  Fwiw, there it is.  Hat tip, <a href="http://www.sennoma.net/main/archives/2007/08/inspiration_series_jacob_colli.php">again</a>, to Andrew and Ralf.<br />
<br /></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/04/everyone_needs_a_hobby.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/04/everyone_needs_a_hobby.php</guid>
         <category>f/8 and be there</category>
         <pubDate>Sat, 19 Apr 2008 22:34:58 -0800</pubDate>
      </item>
            <item>
         <title>In which Gavin Baker finds one of my pet peeves</title>
         <description><![CDATA[<p><img alt="stfu_noob.jpg" src="http://www.sennoma.net/main/archives/graphics/stfu_noob.jpg" width="200" height="150" style="margin-left:1em; margin-right:1em; margin-bottom:1em" align="right"/>It really chafes my scrote when someone says something like <a href="http://www.earlham.edu/~peters/fos/2008/04/harold-varmus-npr-interview.html">this</a>: <blockquote><strong>A comment to bloggers.</strong> I do my best to credit blog posts by the author's real name. However, if you blog under a psuedonym [sic] and don't make it easy to find your actual name, I may not. Unless you want me to attribute your writings to your silly Internet handle, you should include your name somewhere prominent (if not on every page, on the "About" or "Contact" page).</blockquote> With all due respect, Mr Baker, it's not up to you where I should or shouldn't put my "real" name; plenty of people have damn good reasons for remaining anonymous online.  Nor is it up to you to sneer at someone's "silly internet handle".  Put the nick in quotes if you must, and move on.  It's a name, it attaches to a person, and it matters -- at least it <em>should</em> matter -- a good deal less than the substance of whatever you're quoting.  </p>

<p>I realise that netonyms have been pass&eacute; among the hipsterati for some time now, and my impression is that it's a good thing, due mainly to being more comfortable online than crusty old luddites like me.  Nonetheless, that you haven't been online long enough to have a nick that half your friends use instead of your "real" name is no reason the rest of us should subscribe to your particular view of how the internets should work.  You can quote me on that -- you can even use my "real" name if you want.</p>

<p>Damn kids, get off my lawn, mutter grumble mutter mutter...<br />
<br /></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/04/in_which_gavin_baker_finds_one.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/04/in_which_gavin_baker_finds_one.php</guid>
         <category>miscellanea</category>
         <pubDate>Mon, 14 Apr 2008 15:33:08 -0800</pubDate>
      </item>
            <item>
         <title>Term dilution; or, that phrase, you keep using it...</title>
         <description><![CDATA[<p>As the terminology wars between "Free Software" and "Open Source Software" afficionados demonstrate, as soon as you stick a label on what you are doing, someone will come along and co-opt it.  Sometimes, as with F/OSS, there are real disagreements to be had by reasonable people; at other times, well, not so much.  <a href="http://jasscience.blogspot.com/2008/04/open-and-closed-science.html">This</a>: <blockquote>"Open science" is liberated from methodological naturalism (MN), even though it begins with an MN position. That is, all scientists start their work in pursuit of natural explanations for events or natural solutions for problems. If evidence and logic point to an end of the road for natural explanations, on rare occasions a scientist using open science would be willing to consider an explanation which does not force him to a naturalistic conclusion. For instance, the genetic code stored in the DNA molecule has no precedent in naturalism, since all codes are the product of a mind. Open science would allow possible supernatural causation as a topic for further research. The scientist would not be restricted to naturalism as the only explanatory option. But alas! Professional scientists do not practice open science. They practice "closed science."</blockquote> has most emphatically <em>nothing whatsoever</em> to do with Open Science in the sense in which I -- and my friends, colleagues and allies in the nascent movement, see e.g. blogroll to right -- use the term.<br />
<br /></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/04/term_dilution_or_that_phrase_y.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/04/term_dilution_or_that_phrase_y.php</guid>
         <category>open access/open science</category>
         <pubDate>Sun, 13 Apr 2008 15:33:52 -0800</pubDate>
      </item>
            <item>
         <title>reminder</title>
         <description><![CDATA[<p>Over at <a href="http://blog.openwetware.org/freegenes">Free Genes</a>, Jason Kelly has <a href="http://blog.openwetware.org/freegenes/2008/04/13/synthetic-biology-rant-link/">a nice reminder</a> for those of us who tend to be disheartened by slow rates of progress in our chosen field, be it Open Science or, in Jason's case, synthetic biology.  I liked it so much I'm stealing it.  This:<br />
<center><br />
<img alt="firsttransistorgif.jpg" src="http://www.sennoma.net/main/archives/graphics/firsttransistorgif.jpg" width="252" height="252" /><br />
</center><br />
is a transistor, circa 1948.  Now you can buy the equivalent of many millions of these for pocket change, in a device that will fit on your keychain.<br />
<br /></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/04/reminder.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/04/reminder.php</guid>
         <category>open access/open science</category>
         <pubDate>Sun, 13 Apr 2008 12:58:53 -0800</pubDate>
      </item>
            <item>
         <title>Good question.</title>
         <description><![CDATA[<p><a href="http://chem-bla-ics.blogspot.com/">Egon</a> has <a href="http://chem-bla-ics.blogspot.com/2008/04/legal-advice-needed-nih-restricting.html">an interesting angle</a> on Peter Murray-Rust's <a href="http://wwmm.ch.cam.ac.uk/blogs/murrayrust/?p=1028">observation </a>that you can't mine PubMed Central: <blockquote>I was wondering about this section in the CC license of much of the PMC content, such as <a href="http://chem-bla-ics.blogspot.com/2007/12/christmas-presents.html">our paper on userscripts</a> (section 4a of the <a href="http://creativecommons.org/licenses/by/2.0/legalcode">CC-BY 2.0</a>):</p><ul><i>You may not distribute, publicly display, publicly perform, or publicly digitally perform the Work with any technological measures that control access or use of the Work in a manner inconsistent with the terms of this License Agreement.</i></ul>CC-BY 3.0 reads differently, but has similar aims. [...] Peter indicates that the NIH has put in place 'technological measures to control access' to the distribution of <a href="http://chem-bla-ics.blogspot.com/2007/12/christmas-presents.html">our work on userscripts</a> (<a href="http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&amp;pubmedid=18154664">the PMC entry</a>). That is in clear violation of the CC license. [...] What the PMC website should indicate, instead, is that text mining is allowed for the PMC OAI subset, but that they would highly prefer to use the PMC OAI or PMC FTP routes. This is the least they have to do.<br><br>No matter what, I still have the feeling that any technical obstacles are disallowed by the CC-license. Any legal expert here, that can explain me if the CC license allows controlling <i>how</i> people have access to my material?</blockquote> In other words, can they do that?  Like Egon, I await legal advice... how 'bout it, Creative Commons?<br />
<br /></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/04/good_question.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/04/good_question.php</guid>
         <category>open access/open science</category>
         <pubDate>Sat, 12 Apr 2008 23:08:27 -0800</pubDate>
      </item>
            <item>
         <title>Removal of permission barriers is already part of the definition of OA</title>
         <description><![CDATA[<p>Heather Morrison <a href="http://poeticeconomics.blogspot.com/2008/04/glen-newton-suggests-additional.html">points</a> to <a href="http://zzzoot.blogspot.com/2008/04/new-open-access-criterion-support.html">this excellent post</a> by Glen Newton, wherein Glen proposes that Open Access should explicitly include machine readability: <blockquote>Open Access must include access by machines:</p>

<p>    * At minimum one must allow crawls of the site/content or (to reduce the impact of badly configured crawlers) create a compressed XML file containing all metadata and either content, or direct links to content and make it available for download (and if bandwidth is still an issue put it on a P2P network like BitTorrent).<br />
    * Preferable is to offer some kind of API (OTMI) or protocol (OAI-PMH) to get at content and metadata and citations.<br />
    * Better is to offer access to the XML of the articles in addition to the PDF and/or HTML; if the XML actually has some semantic content, then we are approaching the optimum.</p>

<p>The end goal is to support and encourage text mining and analysis of the full-text (preferably semantically rich XML), metadata and citations to allow literature-based exploration and discovery in support of the scientific research process.</blockquote> Most importantly: hear, hear!</p>

<p>I do, however, have a nitpick to make.  Heather makes no comment on Glenn's idea that this is an addition to the definition of OA, but in fact I think it's already built in to the accepted <a href="http://www.soros.org/openaccess/" title="Budapest">B</a><a href="http://www.earlham.edu/%7Epeters/fos/bethesda.htm" title="Bethesda">B</a><a href="http://www.zim.mpg.de/openaccess-berlin/berlindeclaration.html" title="Berlin">B</a> definition.  Peter Suber refers to the removal of price <em>and</em> permission barriers, to distinguish Open from "merely" free access, which removes only price barriers; I've quoted him on this <a href="http://www.sennoma.net/main/archives/2006/12/does_the_green_road_lead_off_a.php">before</a>, so here he is again: <blockquote>The best-known part of the BBB definition is that OA content must be free of charge for all users with an internet connection. However, the BBB definition doesn't stop at free online access. It adds an extra dimension that isn't as easy to describe, and consequently is often dropped or obscured. This extra dimension gives users permission for all legitimate scholarly uses. It removes what I've called permission barriers, as opposed to price barriers. The Budapest statement puts the extra dimension this way: <blockquote>By "open access" to this literature, we mean its free availability on the public internet, permitting any users to read, download, copy, distribute, print, search, or link to the full texts of these articles, crawl them for indexing, pass them as data to software, or use them for any other lawful purpose, without financial, legal, or technical barriers other than those inseparable from gaining access to the internet itself. The only constraint on reproduction and distribution, and the only role for copyright in this domain, should be to give authors control over the integrity of their work and the right to be properly acknowledged and cited. </blockquote>The Bethesda and Berlin statements put it this way: For a work to be OA, the copyright holder must consent in advance to let users "copy, use, distribute, transmit and display the work publicly and to make and distribute derivative works, in any digital medium for any responsible purpose, subject to proper attribution of authorship".<br> <br> All three tributaries of the mainstream BBB definition agree that OA removes both price and permission barriers. Free online access isn't enough. "Fair use" ("fair dealing" in the UK) isn't enough.<br> </blockquote>  Having said all that, though, I'll add that an explicit description of machine readability requirements <em>would</em> be an addition to the accepted definition of OA -- and one that I would welcome.  Peter Murray-Rust <a href="http://wwmm.ch.cam.ac.uk/blogs/murrayrust/?p=1028">recently noted</a> that, according to the "price <em>and</em> permission barriers" view of Open Access, PubMed isn't OA -- even PubMed Central isn't OA.  </p>

<p>I'll go even further: can anyone point me to a single Open Access repository?  I don't know of even one such site that removes both price and permission barriers.  Surely there must be some, but the Big Names (PubMed Central, arXiv, Cogprints, CiteSeer, RePEc, etc -- see <a href="http://roar.eprints.org/?action=home&q=&country=&version=&type=&order=recordcount&submit=Filter">ROAR</a>) don't seem to qualify, because digital objects in these repositories carry their own copyrights, rather than being covered by a blanket license provided by the repository.</p>

<p>Can this be true?  Five years after the BBB definition came together, more than ten years since Stevan Harnad's subversive proposal and on the first day of the NIH mandate -- widely referred to as an OA mandate! -- can it be that we really don't have a single truly OA repository in all the world?  And if it is true, would it help to make the official definition more explicitly machine-friendly?<br />
<br /><br />
</p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/04/removal_of_permissions_barrier.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/04/removal_of_permissions_barrier.php</guid>
         <category>open access/open science</category>
         <pubDate>Mon, 07 Apr 2008 22:40:54 -0800</pubDate>
      </item>
            <item>
         <title>Rob&apos;s right; or, you say &quot;deserter&quot; like it&apos;s a bad thing.</title>
         <description><![CDATA[<p><a href="http://helpychalk.blogspot.com/2008/04/unrecognized-heroes.html">Rob is absolutely correct</a>: anyone who lays down arms and refuses to kill on command is a hero.  I don't give a rat's arse which "side" they're on.</p>

<p>Rob's also right in that you won't hear much about this in the "mainstream" media, and whatever you do hear will be propaganda -- which is why I'm pointing to his entry.</p>

<p>I know, I know -- politics is bad for me, not least because if I blog this there are quite literally a thousand other stories I should blog.  But I'm not going to fall into that trap; I just wanted to say "Rob's right", because this particular story resonated with me.  We now return to our usual semi-silence.<br />
<br /></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/04/robs_right_or_you_say_deserter.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/04/robs_right_or_you_say_deserter.php</guid>
         <category>joy</category>
         <pubDate>Sun, 06 Apr 2008 11:25:35 -0800</pubDate>
      </item>
            <item>
         <title>athymic mouse</title>
         <description><![CDATA[<p><br /><center><br />
<img alt="athymicmouse.JPG" src="http://www.sennoma.net/main/archives/graphics/athymicmouse.JPG" width="601" height="603" /><br />
<br /> <br /><br />
</center></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/03/athymic_mouse.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/03/athymic_mouse.php</guid>
         <category>f/8 and be there</category>
         <pubDate>Thu, 27 Mar 2008 20:20:56 -0800</pubDate>
      </item>
            <item>
         <title>Andy Michaels is a filthy spammer and I hope he spends eternity as the dingleberry closest to Satan&apos;s festering freckle.</title>
         <description><![CDATA[<p>Just got this bullshit trackback (on <a href="http://www.sennoma.net/main/archives/2007/04/another_earlycareer_scientist.php">this totally unrelated entry</a>): <blockquote>I\'m pleased to announce the introduction of two products, the latest is the Ice Cold New Marketer Seminar Series for internet marketers who are just starting out and looking for solid counseling on tools, resources, and services without all the techni... </blockquote> from this bullshit blog: http://andymichaelsblog.com/ (no Googlejuice for you, asshole).</p>

<p>Andy, you're a disease with opposable thumbs.  You're a plague, a pox, a parasite on all that is good and useful.  Other people are making the internet into <a href="http://www.gutenberg.org/wiki/Main_Page">the greatest library that ever was</a>, a <a href="http://www.ncbi.nlm.nih.gov/PubMed/">scholarly resource</a>, a <a href="http://www.biophys.uni-duesseldorf.de/BioNet/Pedro/research_tools.html">tool for science</a>, a <a href="http://www.ibiblio.org/wm/">home for the arts</a>, a <a href="http://scienceblogs.com/">conversation</a>, a <a href="http://sowhatcanido.blogspot.com/">force for social change</a> -- but you, you're out there <em>shilling</em>.  And you're not even selling anything real, you're selling the idea of selling.  You mammon-worshipping maggot.  You're sucking down bandwidth and making all sorts of worthwhile endeavours more difficult by the day, just to push yourself into people's faces and scream "give me money".  You are greed made flesh.  You're the reason we have to have CAPTCHA and Bayesian spam filters and blacklists.  Blind unmitigated selfishness like yours is why we can't have nice things: it's people like you who piss in fountains and spraypaint inanities on grand buildings and carve their initials into ancient trees.  </p>

<p>Andy, you're a soulless meat puppet with the red right hand of a sick, materialistic culture jammed forearm-deep in your pliant rectum.  There just aren't enough curses in the world for you -- there aren't enough bad things I can hope will happen to you.  </p>

<p>Andy, Bill Hicks has <a href="http://sennoma.net/main/edits/Hicks.html">some advice for you</a>.  <br />
<br /></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/03/andy_michaels_is_a_filthy_spam.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/03/andy_michaels_is_a_filthy_spam.php</guid>
         <category>cheats, thieves, liars, degenerates, assholes</category>
         <pubDate>Fri, 21 Mar 2008 16:08:01 -0800</pubDate>
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            <item>
         <title>aw, NUTs</title>
         <description><![CDATA[<p>I'm still spending pretty much every waking moment in the lab -- it's OK Mum, I'm having fun and taking care of myself! -- because I have some really neat results and want to send them out into the world asap.  (I will do my best to persuade the boss to submit to an OA journal and to put a preprint in Nature Precedings, but no guarantees there.)</p>

<p>So, this entry is just to round up a couple of NUTs -- Nagging Unfinished Tasks.  </p>

<p><img alt="thing2.JPG" src="http://www.sennoma.net/main/archives/graphics/thing2.JPG" width="150" height="227" align="left" style="margin-left:0.5em; margin-right:0.5em; margin-bottom:0.5em" /> <strong>NUT the first:</strong> 2008 <a href="http://wiki.scienceblogging.com/scienceblogging/">Science Blogging Conference</a> -- I never did get around to posting about it, but I have left <a href="http://www.simpy.com/user/sennoma/tag/%22lostart%22/">comments</a> on other people's entries saying most of what I had to say.   Mostly, it was a blast and I wish I could have that kind of experience more often, as it really recharges my enthusiasm.  </p>

<p>The one thing I meant to do, and didn't get around to, was pointing to the sponsors.  I hate advertising, and was even a little put off by the "swag bags" given out at the conference (very much a minority opinion there) -- but sponsorship seems different to me.  Provided the recipients do their bit, the sponsors can make a real contribution and raise their profile in a "target market" without having to spam anyone.  So, I wanted to do my bit to promote those <a href="http://wiki.scienceblogging.com/scienceblogging/show/Our+Sponsors">individuals, businesses and organizations who helped Anton, Bora & Co. to make the conference such a success</a>: if you have a moment, click through to that link and check a few of 'em out.  </p>

<p><img alt="hotelroom.JPG" src="http://www.sennoma.net/main/archives/graphics/hotelroom.JPG" width="400" height="300" align="right" style="margin-left:0.5em; margin-right:0.5em; margin-bottom:0.5em"/>  I also want to highlight the contribution made by the <a href="http://www.radisson.com/researchtrianglenc">Radisson Research Triangle Park</a>, who weren't exactly sponsors but made a big difference to my stay.  It's a very nice hotel, much swankier than my usual budget-driven choices, and they provided a special attendee rate for the conference weekend which made them the cheapest alternative within any reasonable distance of the conference.  This was great, because they are in fact walking distance from the Sigma Xi Center where the conference was held, and quite a lot of the attendees took them up on their offer.  This made transport easy to figure out, and the after-conference bar sessions lively and fun.  I really like not worrying about transport to and from conference venues, and I really like being able to walk from the bar to my room after staying up way too late talking to interesting people, so thanks to the Radisson RTP for making my stay so enjoyable.  If you're going to stay in NC, keep them in mind.  On the right is a picture of my room there -- yup, two double beds all to myself, same cheap rate.  (On the left is a DNA-inspired sculpture that hangs in the central stairwell of the Sigma Xi Center.)</p>

<p><strong>NUT the second:</strong>  Whatever happened to <a href="http://www.sennoma.net/main/archives/2008/01/they_get_letters.php">those letters I was thinking about sending</a>?  Well, in the end, I decided not to send them.  The bottom line is that, as Peter Suber pointed out to me in email, it's a given that almost none of the recipients of such a letter would respond.  I finally decided that such a predictably low response rate would reduce the exercise to little more than muck-raking, since no useful data would come of it.  It would take a lot of work to find the appropriate contact person at each company and tailor the letters to their public position on OA, and in the end nobody would gain from it.  I hope this is not a great disappointment to the few people who came forward to say they'd sign such letters -- if it is, let me know, and we can discuss possible ways to resurrect the idea or alternative ways to find out the same target information.  It's not so much dead as buried under the weight of other, more pressing (and, I hope, more productive) commitments.<br />
<br /></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/03/hiatus_continues.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/03/hiatus_continues.php</guid>
         <category>mememe</category>
         <pubDate>Sun, 09 Mar 2008 18:40:06 -0800</pubDate>
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            <item>
         <title>Open Science Conference proposal</title>
         <description><![CDATA[<p>I'm probably too late with this to do any good, but <a href="http://onebiglab.blogspot.com/">Shirley Wu</a> is putting together a <a href="http://onebiglab.blogspot.com/search/label/psb%20proposal">proposal for an Open Science session</a> at the <a href="http://psb.stanford.edu/">Pacific Symposium on Biocomputing</a>.  You can read a <a href="http://docs.google.com/Doc?docid=dv4t5rx_33fpxx9pw5&hl=en">draft</a> of the proposal which already reads pretty well to me, and Shirley could do with letters of support: <blockquote>One thing that would really help outside of the proposal itself is to have actual letters of support. That way the organizers will know there is serious interest and commitment for a session on Open Science - it's a gamble for them, frankly, but much less of one if there is a good crowd on board.<br><br>So if you would like to support this proposal and are willing to commit to participating should it get accepted, please <a href="mailto:shwu19@stanford.edu">send me an email</a> to that effect (with as many details of your anticipated participation as you can provide at this time), and I will include all the emails as "supplementary material" next Friday.</blockquote> Er, yes, that's <i>this coming</i> Friday... I did mention I was late with this, no?  </p>

<p>So anyway, if you can come up with an idea for a presentation or can simply commit to attending, please drop Shirley a line.  She's another graduate student who's caught the Open Science bug, and the more of them we have -- and the more we can do to help and encourage them -- the better.</p>

<p><br /></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/02/open_science_conference_propos.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/02/open_science_conference_propos.php</guid>
         <category>open access/open science</category>
         <pubDate>Wed, 06 Feb 2008 18:29:11 -0800</pubDate>
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            <item>
         <title>Wheeeeeeeeeeee!</title>
         <description><![CDATA[<p>I'm off to the <a href="http://scienceblogging.com/">2008 North Carolina Science Blogging Conference</a>!  I have to travel all day Friday and Sunday for a one-day conference on Saturday -- and it's well worth every dull airport-infested minute!  </p>

<p>Last year's was tremendous fun; I'm looking forward to an unbroken attendance record down the years.  You can still add ideas to the <a href="http://wiki.scienceblogging.com/scienceblogging/">conference wiki</a>, join in virtually via <a href="http://wiki.scienceblogging.com/scienceblogging/show/Chat">chat room</a>, and watch <a href="http://scienceblogs.com/thusspakezuska/2008/01/join_our_nc_science_blogging_c.php">at least one of the sessions</a> online.</p>

<p><strong>Update:</strong> Bora has <a href="http://scienceblogs.com/clock/2008/01/no_matter_where_you_are_you_ca.php">further details</a> on how you can participate even if you're not there in meatspace.<br />
<br /></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/01/wheeeeeeeeeeee.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/01/wheeeeeeeeeeee.php</guid>
         <category>mememe</category>
         <pubDate>Thu, 17 Jan 2008 21:28:10 -0800</pubDate>
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         <title>Mitch Waldrop on Science 2.0</title>
         <description><![CDATA[<p>I'm <a title="google's link: search is usually better than Technoratty" href="http://blogsearch.google.com/blogsearch?q=link:http://www.sciam.com/article.cfm%3Fid%3Dscience-2-point-0-great-new-tool-or-great-risk" id="raio">way behind on this</a>, but anyway: a while back, writer <a title="he even blogs!" href="http://mmwaldrop.com/Starclouds/" id="k:cp">Mitch Waldrop</a> interviewed me and a whole bunch of other people interested in (what I usually call) Open Science, for an upcoming article in Scientific American.&nbsp; A draft of the article is now <a title="and you should, of course, read it -- I'm quoted!" href="http://www.sciam.com/article.cfm?id=science-2-point-0-great-new-tool-or-great-risk" id="egu8">available for reading</a>, but even better -- in a wholly subject matter appropriate twist, it's also available for <a title="you don't get to edit directly, but you do get to argue for changes prior to print" href="http://science-community.sciam.com/thread.jspa?threadID=300006001" id="qa8h">input from readers</a>.&nbsp; Quoth Mitch:<blockquote>Welcome to a Scientific American experiment in "networked journalism," in which readers -- you --get to collaborate with the author to give a story its final form. </p>

<p>The article, below, is a particularly apt candidate for such an experiment: it's my feature story on "Science 2.0," which describes how researchers are beginning to harness wikis, blogs and other Web 2.0 technologies as a potentially transformative way of doing science. The draft article appears here, several months in advance of its print publication, and we are inviting you to comment on it. Your inputs will influence the article's content, reporting, perhaps even its point of view. </p>

<p>So consider yourself invited. Please share your thoughts about the promise and peril of Science 2.0. -- just post your inputs in the Comment section below.</blockquote> It's good to see Science 2.0 getting not just mainstream attention, but well-crafted and balanced mainstream attention.&nbsp; It's also good to see a "Journalism 2.0" approach being tested, so if you have ideas or opinions, go participate.</p>

<p>On a personal note, I'm pleased but a little embarrassed to have been quoted by name in an article for which I know Mitch interviewed a lot of people who are actually *doing* Science 2.0, not just cheering from the sidelines like me.&nbsp; It's hard to be critical of choices made in the face of space constraints (the article is destined for print), but there's no such limit online.&nbsp; I wonder whether Mitch and his SciAm editors would consider putting a longer version online?&nbsp; </p>

<p>In a similar vein, in comments <a title="John Dupuis' Confessions of a Science Librarian" href="http://jdupuis.blogspot.com/2008/01/science-20-hits-big-time.html" id="kjyr">here</a> Bora asks whether we (John's "usual suspects") couldn't put together a longer article for publication somewhere.&nbsp; I think I might have a better idea (though it's hardly original with me).&nbsp; From my point of view, the best thing about my <a title="3Quarks Open Science articles" href="http://3quarksdaily.blogs.com/3quarksdaily/2007/01/the_future_of_s.html" id="f1vj">3Quarks Open Science articles</a> from about a year ago is that they are already wildly out of date.&nbsp; The -- to me -- obvious way to update them and keep them up-to-date is to turn them into a wiki (probably starting from the <a title="Nodalpoint wiki's Open Science page" href="http://wiki.nodalpoint.org/open_science" id="kq-r">Nodalpoint wiki's Open Science page</a>).&nbsp; I think the articles cover most of the main bases, and each section could relatively easily be turned into a wiki page; with a little attention to style, it should then be fairly easy to re-write the articles from the updated information.&nbsp; I am, as usual, swamped with work, so I won't be able to wiki-ize anything any time soon -- I do intend to get to it eventually, but in the meantime the articles themselves are all CC-BY and <a title="my Simpy bookmarks" href="http://www.simpy.com/user/sennoma/links" id="aa8g">my Simpy bookmarks</a>, which should help with updating, are pub dom and I'd be happy to help if anyone else wanted to take a stab at it.&nbsp; </p>

<p>Finally, if you enjoyed the SciAm article, you might also enjoy more of Mitch's writing: he has a <a title="blog" href="http://mmwaldrop.com/Starclouds/" id="f3fa">blog</a>, a <a title="new gig at Nature" href="http://mmwaldrop.com/Starclouds/2008/01/02/joining-nature-magazine/" id="wwa.">new gig at Nature</a> and has written three books to date: <a href="http://www.amazon.com/gp/product/014200135X?ie=UTF8&amp;tag=starclouds-20&amp;link_code=as3&amp;camp=211189&amp;creative=373489&amp;creativeASIN=014200135X">The Dream Machine (2001)</a>, <a href="http://www.amazon.com/gp/product/0671872346?ie=UTF8&amp;tag=starclouds-20&amp;link_code=as3&amp;camp=211189&amp;creative=373489&amp;creativeASIN=0671872346">Complexity (1992)</a> and <a href="http://www.amazon.com/gp/product/0802708994?ie=UTF8&amp;tag=starclouds-20&amp;link_code=as3&amp;camp=211189&amp;creative=373489&amp;creativeASIN=0802708994">Man-Made Minds (1987)</a>. (I swiped his affiliate links, I hope they still work.)<br />
<br /></p>]]></description>
         <link>http://www.sennoma.net/main/archives/2008/01/mitch_waldrop_on_science_20.php</link>
         <guid>http://www.sennoma.net/main/archives/2008/01/mitch_waldrop_on_science_20.php</guid>
         <category>open access/open science</category>
         <pubDate>Sat, 12 Jan 2008 19:28:50 -0800</pubDate>
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